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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
ChIP-seq
109
total RNA-seq
28
snATAC-seq
17
ATAC-seq
17
pCHi-C
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
142
DNA binding
118
Transcription
45
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
transcription factor
8
control
5
RNA binding protein
Date released
223
May, 2021
45
May, 2020
23
February, 2023
19
April, 2020
16
January, 2021
1
March, 2019
Available data
220
bigWig
204
bam
132
bed narrowPeak
96
tsv
84
tagAlign
fastq
6
txt
2
bed bed3+
Organism
326
Homo sapiens
Biosample type
239
primary cell
48
tissue
35
in vitro differentiated cells
5
cell line
Organ
28
pancreas
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
236
T1D
72
AMP
19
LungMap
Genome assembly (visualization)
220
hg19
180
GRCh38
Lab
2717
AMP-T2D consortium
307
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
27
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
5
inconsistent ontology term
target.investigated_as!
transcription factor
files.file_type!
fastq
BIOSAMPLE
ASSAY
327 results
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ChIP-seq
total RNA-seq
snATAC-seq
ATAC-seq
pCHi-C
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
5
6
12
lung
10
9
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
25
5
5
cell line
EndoC_BH1
3
2
See all biosamples
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