Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
total RNA-seq
154
ChIP-seq
109
ATAC-seq
20
single cell RNA-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
Assay category
184
Transcription
154
DNA binding
127
DNA accessibility
1
3D chromatin structure
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
235
May, 2021
128
August, 2021
45
May, 2020
24
May, 2022
23
February, 2023
19
April, 2020
January, 2021
14
May, 2023
Available data
220
bigWig
204
bam
196
bed narrowPeak
96
tsv
84
tagAlign
64
xls
63
txt
24
fastq
2
bed bed3+
1
hic
Organism
487
Homo sapiens
Biosample type
231
primary cell
205
tissue
47
in vitro differentiated cells
5
cell line
Organ
142
kidney
43
pancreas
19
lung
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
249
AMP
220
T1D
19
LungMap
Genome assembly (visualization)
255
GRCh38
239
hg19
Lab
3912
AMP-T2D consortium
327
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
month_released!
January, 2021
BIOSAMPLE
ASSAY
488 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
primary cell
monocyte
53
84
1
CD8-positive, alpha-beta T cell
4
33
1
B cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 30 more…
tissue
kidney
49
75
11
6
1
islet of Langerhans
11
29
2
lung
9
10
pancreas
1
thymus
1
in vitro differentiated cells
embryonic stem cell
5
37
5
cell line
EndoC_BH1
3
2
See all biosamples
Download