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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
70
total RNA-seq
34
ATAC-seq
28
snATAC-seq
17
pCHi-C
9
single cell RNA-seq
Assay category
154
DNA binding
79
Transcription
62
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
235
May, 2021
May, 2020
24
May, 2022
19
April, 2020
18
February, 2023
16
January, 2021
Available data
175
bigWig
159
bam
132
bed narrowPeak
84
tagAlign
51
tsv
24
fastq
6
txt
2
bed bed3+
Organism
311
Homo sapiens
Biosample type
194
primary cell
71
tissue
47
in vitro differentiated cells
cell line
Organ
51
pancreas
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
186
T1D
107
AMP
19
LungMap
Genome assembly (visualization)
193
hg19
135
GRCh38
Lab
3002
AMP-T2D consortium
324
Klaus Kaestner, Upenn
293
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
month_released!
May, 2020
biosample_type!
cell line
BIOSAMPLE
ASSAY
312 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
single cell RNA-seq
primary cell
monocyte
84
51
1
CD8-positive, alpha-beta T cell
33
2
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 11 more…
tissue
islet of Langerhans
11
29
6
lung
10
9
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
37
5
5
See all biosamples
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