Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
28
snATAC-seq
11
total RNA-seq
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
57
DNA accessibility
20
Transcription
Date released
May, 2021
24
May, 2022
23
February, 2023
19
April, 2020
16
January, 2021
Available data
69
bam
bigWig
45
tsv
24
fastq
18
bed narrowPeak
6
txt
Organism
81
Homo sapiens
Biosample type
69
tissue
8
primary cell
5
cell line
Organ
50
pancreas
19
lung
8
blood
8
bodily fluid
Project
39
T1D
24
AMP
19
LungMap
Genome assembly (visualization)
18
hg19
Lab
1017
AMP-T2D consortium
314
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
63
Kyle Gaulton, UCSD
47
KPMP
24
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
1
Maike Sander, UCSD
month_released!
May, 2021
files.file_type!
bigWig
BIOSAMPLE
ASSAY
82 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
snATAC-seq
total RNA-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
29
6
11
lung
10
9
pancreas
4
primary cell
peripheral blood mononuclear cell
8
cell line
EndoC_BH1
3
2
Download