Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
total RNA-seq
154
ChIP-seq
61
single cell RNA-seq
55
snATAC-seq
26
ATAC-seq
17
pCHi-C
6
WGBS
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
Assay category
262
Transcription
154
DNA binding
81
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
235
May, 2021
May, 2022
99
February, 2023
59
September, 2020
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
7
August, 2020
3
October, 2022
Available data
230
bigWig
180
bam
169
fastq
114
bed narrowPeak
102
tsv
84
tagAlign
19
zippedFastqFolder
3
bedpe bed3+
3
cool
3
hic
2
bed bed3+
Organism
527
Homo sapiens
Biosample type
429
primary cell
47
in vitro differentiated cells
47
tissue
5
cell line
Organ
99
pancreas
72
epithelium
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
236
T1D
190
HPAP
83
AMP
19
LungMap
Genome assembly (visualization)
223
hg19
190
GRCh38
Lab
3910
AMP-T2D consortium
319
Kyle Gaulton, UCSD
190
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
5
inconsistent ontology term
month_released!
May, 2022
BIOSAMPLE
ASSAY
528 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
pCHi-C
WGBS
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
primary cell
monocyte
53
84
1
Langerhans cell
52
27
pancreatic alpha cell
42
7
6
1
exocrine cell
39
CD8-positive, alpha-beta T cell
4
33
1
+ See 36 more…
in vitro differentiated cells
embryonic stem cell
5
37
5
tissue
islet of Langerhans
5
6
11
lung
9
10
pancreas
1
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
Download