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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
59
total RNA-seq
17
pCHi-C
10
snATAC-seq
9
single cell RNA-seq
5
ATAC-seq
Assay category
154
DNA binding
68
Transcription
15
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
235
May, 2021
45
May, 2020
24
May, 2022
23
February, 2023
19
April, 2020
16
January, 2021
Available data
175
bigWig
135
bam
114
bed narrowPeak
84
tagAlign
51
tsv
2
bed bed3+
Organism
253
Homo sapiens
Biosample type
186
primary cell
47
in vitro differentiated cells
21
tissue
Organ
19
lung
1
bone element
1
bone marrow
1
connective tissue
1
pancreas
1
thymus
Project
152
T1D
83
AMP
19
LungMap
Genome assembly (visualization)
175
hg19
135
GRCh38
Lab
235
Kyle Gaulton, UCSD
164
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
254 results
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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
snATAC-seq
single cell RNA-seq
ATAC-seq
primary cell
monocyte
84
51
1
CD8-positive, alpha-beta T cell
33
2
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
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in vitro differentiated cells
embryonic stem cell
37
5
5
tissue
lung
10
9
pancreas
1
thymus
1
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