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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
total RNA-seq
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
Assay category
50
Transcription
13
DNA accessibility
Date released
235
May, 2021
45
May, 2020
24
May, 2022
23
February, 2023
19
April, 2020
16
January, 2021
Available data
45
bam
45
bigWig
45
tsv
Organism
68
Homo sapiens
Biosample type
45
primary cell
18
tissue
5
cell line
Organ
18
pancreas
Project
68
T1D
Genome assembly (visualization)
45
GRCh38
45
hg19
Lab
399
AMP-T2D consortium
76
Klaus Kaestner, Upenn
68
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
0
Xin Sun, UCSD
Audit category:
4
inconsistent ontology term
BIOSAMPLE
ASSAY
68 results
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total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
primary cell
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
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tissue
islet of Langerhans
5
11
2
cell line
EndoC_BH1
3
2
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