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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
104
total RNA-seq
17
pCHi-C
5
ATAC-seq
Assay category
154
DNA binding
104
Transcription
5
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
235
May, 2021
45
May, 2020
24
May, 2022
23
February, 2023
19
April, 2020
16
January, 2021
Available data
220
bigWig
180
bam
114
bed narrowPeak
96
tsv
84
tagAlign
2
bed bed3+
Organism
280
Homo sapiens
Biosample type
231
primary cell
47
in vitro differentiated cells
2
tissue
Organ
1
bone element
1
bone marrow
1
connective tissue
1
pancreas
1
thymus
Project
197
T1D
83
AMP
Genome assembly (visualization)
220
hg19
180
GRCh38
Lab
460
AMP-T2D consortium
280
Kyle Gaulton, UCSD
0
Xin Sun, UCSD
Audit category:
5
inconsistent ontology term
BIOSAMPLE
ASSAY
280 results
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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
B cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 30 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
tissue
pancreas
1
thymus
1
See all biosamples
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