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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
total RNA-seq
34
ATAC-seq
20
ChIP-seq
20
snATAC-seq
17
pCHi-C
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
115
Transcription
54
DNA accessibility
20
DNA binding
Target of assay
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
101
May, 2021
45
May, 2020
24
May, 2022
23
February, 2023
10
April, 2020
8
January, 2021
Available data
120
bam
106
bigWig
96
tsv
24
fastq
18
bed narrowPeak
6
txt
2
bed bed3+
Organism
210
Homo sapiens
Biosample type
117
primary cell
62
tissue
27
in vitro differentiated cells
5
cell line
Organ
51
pancreas
10
lung
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
144
T1D
57
AMP
10
LungMap
Genome assembly (visualization)
124
hg19
96
GRCh38
Lab
2791
AMP-T2D consortium
239
Klaus Kaestner, Upenn
201
Kyle Gaulton, UCSD
131
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
35
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
5
Patrick T. Ellinor, Broad
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
organ_slims!
blood
target.investigated_as!
histone
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
211 results
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total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
3
1
B cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 30 more…
tissue
islet of Langerhans
11
29
6
lung
10
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
5
17
cell line
EndoC_BH1
3
2
See all biosamples
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