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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
16
pCHi-C
3
ChIP-seq
Assay category
98
Transcription
3
DNA binding
Target of assay
114
histone
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
72
May, 2021
45
May, 2020
Available data
101
bigWig
96
bam
96
tsv
2
bed bed3+
Organism
117
Homo sapiens
Biosample type
117
primary cell
71
tissue
27
in vitro differentiated cells
5
cell line
Organ
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
112
T1D
5
AMP
Genome assembly (visualization)
101
hg19
96
GRCh38
Lab
401
AMP-T2D consortium
324
Klaus Kaestner, Upenn
117
Kyle Gaulton, UCSD
1
ITG
0
Xin Sun, UCSD
Audit category:
5
inconsistent ontology term
organ_slims!
blood
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
117 results
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total RNA-seq
pCHi-C
ChIP-seq
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
1
3
B cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
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