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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
total RNA-seq
20
ChIP-seq
18
snATAC-seq
17
pCHi-C
9
single cell RNA-seq
5
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
112
Transcription
23
DNA accessibility
20
DNA binding
Target of assay
134
histone
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
100
May, 2021
45
May, 2020
19
April, 2020
8
January, 2021
5
February, 2023
Available data
106
bigWig
96
bam
96
tsv
2
bed bed3+
Organism
176
Homo sapiens
Biosample type
125
primary cell
27
in vitro differentiated cells
20
tissue
5
cell line
Organ
pancreas
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
126
T1D
32
AMP
19
LungMap
Genome assembly (visualization)
106
hg19
96
GRCh38
Lab
2493
AMP-T2D consortium
172
Klaus Kaestner, Upenn
158
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
Audit category:
5
inconsistent ontology term
organ_slims!
pancreas
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
177 results
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total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
single cell RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
3
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
5
17
5
tissue
lung
10
9
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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