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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ATAC-seq
13
total RNA-seq
10
snATAC-seq
2
Hi-C
Assay category
40
DNA accessibility
13
Transcription
2
3D chromatin structure
Date released
24
May, 2022
18
February, 2023
8
January, 2021
2
August, 2021
2
March, 2019
1
May, 2021
Available data
24
bam
24
fastq
18
bed narrowPeak
6
txt
1
bedpe
1
bedpe bed3+
1
hic
1
tsv
Organism
55
Homo sapiens
Biosample type
55
tissue
Organ
55
pancreas
31
liver
19
lung
8
blood
8
bodily fluid
2
kidney
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
29
AMP
26
T1D
Genome assembly (visualization)
20
hg19
1
GRCh38
Lab
725
AMP-T2D consortium
152
Klaus Kaestner, Upenn
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
0
Xin Sun, UCSD
BIOSAMPLE
ASSAY
55 results
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ATAC-seq
total RNA-seq
snATAC-seq
Hi-C
tissue
islet of Langerhans
30
12
6
2
pancreas
1
4
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