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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
total RNA-seq
28
snATAC-seq
17
pCHi-C
11
ATAC-seq
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
110
Transcription
39
DNA accessibility
Target of assay
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
68
May, 2021
45
May, 2020
23
February, 2023
19
April, 2020
16
January, 2021
Available data
96
bam
96
bigWig
96
tsv
Organism
170
Homo sapiens
Biosample type
120
primary cell
46
tissue
5
cell line
Organ
26
pancreas
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
152
T1D
AMP
19
LungMap
Genome assembly (visualization)
96
GRCh38
96
hg19
Lab
324
Klaus Kaestner, Upenn
152
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
5
inconsistent ontology term
target.investigated_as!
histone
award.project!
AMP
BIOSAMPLE
ASSAY
171 results
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total RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
5
6
11
lung
10
9
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
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