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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
CRISPR genome editing followed by DNA sequencing
2
ChIP-seq
2
HiChIP
2
total RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
4
Transcription
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
3
March, 2020
2
February, 2023
2
March, 2023
1
May, 2021
Available data
4
bam
4
bigWig
2
bed narrowPeak
2
tsv
Organism
6
Homo sapiens
Biosample type
529
primary cell
78
tissue
8
cell line
2
stem cell
Organ
4
epithelium
4
pancreas
Project
AMP
6
T1D
2
community
Genome assembly (visualization)
4
GRCh38
4
hg19
Lab
4
AMP-T2D consortium
2
Anna Gloyn, Oxford
2
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
month_released!
April, 2020
award.project!
AMP
assay_title!
CRISPR genome editing followed by DNA sequencing
BIOSAMPLE
ASSAY
8 results
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ChIP-seq
HiChIP
total RNA-seq
shRNA RNA-seq
siRNA RNA-seq
cell line
EndoC_BH1
2
2
2
EndoC-BH1
1
1
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