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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ATAC-seq
6
MeRIP-seq
6
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
ChIP-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
19
DNA accessibility
3
3D chromatin structure
2
Transcription
1
DNA binding
Target of assay
3
control
3
nucleotide modification
1
transcription factor
Date released
August, 2021
16
May, 2021
6
February, 2023
6
March, 2020
6
November, 2020
2
March, 2023
1
December, 2018
1
February, 2021
1
January, 2018
1
May, 2020
1
November, 2017
1
November, 2019
1
October, 2019
1
October, 2022
Available data
bam
500
bigWig
427
fastq
390
bed narrowPeak
355
bigBed narrowPeak
102
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
Organism
40
Homo sapiens
Biosample type
601
tissue
479
primary cell
98
in vitro differentiated cells
44
cell line
7
stem cell
Organ
27
pancreas
26
epithelium
4
liver
2
kidney
1
blood
1
bodily fluid
1
mammary gland
Project
37
AMP
5
T1D
2
community
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
31
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
27
inconsistent ontology term
Audit category:
1
inconsistent assembly
month_released!
August, 2021
files.file_type!
bam
BIOSAMPLE
ASSAY
44 results
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Clear Filters
ATAC-seq
MeRIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
ChIP-seq
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
EndoC_BH1
18
6
3
1
2
1
HepG2
2
1
1
EndoC-BH1
1
1
GM12878
1
MCF-7
1
MIN6
1
Panc1
1
RCC 7860 VHL
1
RCC 7860 vector
1
fibroblast cell line
1
See all biosamples
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