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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
313
ChIP-seq
10
ATAC-seq
1
DNase-seq
Assay category
313
DNA binding
11
DNA accessibility
Target of assay
287
transcription factor
88
recombinant protein
57
RNA binding protein
24
chromatin remodeller
23
histone
23
histone modification
13
narrow histone mark
10
broad histone mark
1
other context
1
other post-translational modification
Date released
197
November, 2017
56
November, 2018
December, 2018
15
January, 2019
14
August, 2021
14
February, 2021
14
October, 2019
12
November, 2019
1
March, 2020
1
May, 2021
Available data
555
bam
495
bigWig
399
fastq
377
bed narrowPeak
328
bigBed narrowPeak
119
tsv
59
bed broadPeak
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
324
Homo sapiens
Biosample type
805
tissue
324
cell line
248
primary cell
131
in vitro differentiated cells
2
stem cell
Organ
256
liver
27
blood
27
bodily fluid
20
pancreas
15
epithelium
12
artery
12
blood vessel
12
heart
12
vasculature
8
kidney
Project
322
AMP
2
T1D
Genome assembly (visualization)
320
hg19
286
GRCh38
Lab
310
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
21
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
month_released!
December, 2018
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
324 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
255
1
GM12878
27
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
4
8
Panc1
6
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
glomerular visceral epithelial cell
1
iPSC derived cell line
1
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