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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
4
Hi-C
3
pCHi-C
Assay category
40
DNA binding
4
3D chromatin structure
Target of assay
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
10
control
4
transcription factor
Date released
20
August, 2021
14
August, 2017
6
May, 2021
4
March, 2020
2
October, 2019
1
August, 2018
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
129
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
47
Homo sapiens
Biosample type
248
tissue
104
primary cell
47
in vitro differentiated cells
22
cell line
Organ
15
connective tissue
3
epithelium
3
pancreas
1
adipose tissue
Project
47
AMP
Genome assembly (visualization)
23
hg19
18
GRCh38
Lab
47
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
month_released!
December, 2019
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
Hi-C
pCHi-C
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
cardiomyocytes (cardiac muscle cell)
2
1
pancreatic PP cell
3
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
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