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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
11
total RNA-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
74
DNA binding
13
Transcription
8
DNA accessibility
6
DNA methylation
Target of assay
33
histone
33
histone modification
24
control
20
broad histone mark
17
transcription factor
13
narrow histone mark
5
RNA binding protein
Date released
February, 2021
57
August, 2017
23
October, 2018
10
July, 2019
2
February, 2020
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
54
bam
43
fastq
37
bigWig
13
bed narrowPeak
13
tsv
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
102
Homo sapiens
Biosample type
103
tissue
89
in vitro differentiated cells
36
primary cell
1
stem cell
Organ
505
pancreas
360
liver
291
kidney
273
heart
265
brain
133
blood vessel
133
vasculature
116
limb
103
connective tissue
102
adipose tissue
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
103
AMP
Genome assembly (visualization)
38
hg19
36
GRCh38
Lab
103
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
February, 2021
BIOSAMPLE
ASSAY
103 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
5
1
2
1
subcutaneous adipose tissue
12
5
1
1
1
white adipose tissue
12
adipose tissue
2
1
3
3
1
adipose tissue(adipose white tissue)
1
islet of Langerhans
1
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