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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
326
ChIP-seq
5
total RNA-seq
1
WGBS
Assay category
326
DNA binding
5
Transcription
1
DNA methylation
Target of assay
292
transcription factor
81
recombinant protein
52
RNA binding protein
20
chromatin remodeller
18
histone
18
histone modification
13
control
9
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
268
November, 2017
45
November, 2018
14
August, 2021
5
January, 2019
Available data
367
fastq
366
bam
332
bigWig
308
bed narrowPeak
293
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
14
tsv
12
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
332
Homo sapiens
Biosample type
332
cell line
95
tissue
14
in vitro differentiated cells
11
primary cell
Organ
332
liver
56
artery
56
blood vessel
56
heart
56
pancreas
56
vasculature
55
blood
55
bodily fluid
50
epithelium
12
kidney
8
embryo
Project
332
AMP
Genome assembly (visualization)
327
hg19
267
GRCh38
Lab
318
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
May, 2020
BIOSAMPLE
ASSAY
332 results
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ChIP-seq
total RNA-seq
WGBS
cell line
HepG2
326
5
1
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