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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
483
ChIP-seq
109
total RNA-seq
13
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
109
Transcription
Date released
78
February, 2021
17
August, 2021
5
January, 2019
4
March, 2020
May, 2021
4
October, 2019
1
November, 2019
Available data
109
tsv
100
bam
100
bigWig
5
fastq
Organism
109
Homo sapiens
Biosample type
992
tissue
192
primary cell
109
cell line
52
in vitro differentiated cells
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
30
epithelium
29
pancreas
14
liver
8
embryo
4
kidney
Project
107
AMP
2
T1D
Genome assembly (visualization)
100
GRCh38
100
hg19
Lab
100
AMP-T2D consortium
9
Bing Ren, UCSD
Audit category:
32
inconsistent ontology term
month_released!
May, 2021
organ_slims!
stomach
BIOSAMPLE
ASSAY
109 results
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total RNA-seq
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
29
HepG2
14
H1-hESC
8
early embryonic cell
2
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
glomerular visceral epithelial cell
1
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