Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ATAC-seq
67
single cell RNA-seq
56
total RNA-seq
40
ChIP-seq
26
snATAC-seq
4
MeRIP-seq
1
Hi-C
1
pCHi-C
Assay category
123
Transcription
117
DNA accessibility
40
DNA binding
1
3D chromatin structure
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
5
RNA binding protein
5
transcription factor
2
control
2
nucleotide modification
Date released
129
August, 2021
May, 2022
47
September, 2023
40
May, 2024
19
April, 2020
18
February, 2023
14
May, 2023
8
January, 2021
4
March, 2019
4
November, 2020
2
May, 2021
1
October, 2017
Available data
104
bed narrowPeak
64
xls
57
txt
41
bigWig
2
bed broadPeak
2
fastq
hic
1
bam
1
bedpe
1
bedpe bed3+
1
tsv
Organism
285
Homo sapiens
Biosample type
426
primary cell
286
tissue
54
in vitro differentiated cells
46
cell line
2
stem cell
Organ
188
kidney
40
heart
38
pancreas
19
lung
1
thymus
Project
193
AMP
47
KPMP
27
T1D
19
LungMap
Genome assembly (visualization)
118
GRCh38
3
hg19
Lab
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
month_released!
May, 2022
files.file_type!
hic
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
286 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
MeRIP-seq
Hi-C
pCHi-C
tissue
kidney
75
58
49
6
left cardiac atrium
40
islet of Langerhans
16
6
6
4
1
lung
9
10
pancreas
1
4
thymus
1
See all biosamples
Download