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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
ChIP-seq
Assay category
169
DNA binding
115
Transcription
31
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
120
transcription factor
31
RNA binding protein
24
control
23
histone
23
histone modification
23
recombinant protein
15
chromatin remodeller
12
narrow histone mark
11
broad histone mark
Date released
November, 2017
60
November, 2018
27
December, 2018
23
October, 2019
18
August, 2021
18
January, 2019
13
November, 2019
8
February, 2021
1
March, 2020
1
May, 2021
Available data
151
bam
143
bed narrowPeak
143
bigWig
105
fastq
104
bigBed narrowPeak
8
tagAlign
Organism
169
Homo sapiens
Biosample type
785
tissue
270
primary cell
198
in vitro differentiated cells
169
cell line
3
stem cell
Organ
63
liver
60
blood
60
bodily fluid
28
pancreas
15
epithelium
10
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
167
AMP
2
T1D
Genome assembly (visualization)
141
hg19
129
GRCh38
Lab
151
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
25
inconsistent ontology term
1
inconsistent control
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2017
BIOSAMPLE
ASSAY
169 results
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ChIP-seq
cell line
HepG2
63
GM12878
60
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
iPSC derived cell line
2
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