Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
144
ChIP-seq
77
total RNA-seq
10
ATAC-seq
4
STARR-seq
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
144
DNA binding
79
Transcription
10
DNA accessibility
3
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
112
transcription factor
30
RNA binding protein
19
control
16
recombinant protein
15
chromatin remodeller
11
histone
11
histone modification
6
narrow histone mark
5
broad histone mark
Date released
November, 2017
70
February, 2021
61
November, 2018
41
August, 2021
28
December, 2018
23
January, 2019
15
October, 2019
6
February, 2023
4
March, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
204
bam
194
bigWig
132
bed narrowPeak
112
fastq
104
bigBed narrowPeak
80
tsv
8
tagAlign
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
1
vcf
Organism
249
Homo sapiens
Biosample type
2427
tissue
997
primary cell
278
in vitro differentiated cells
253
cell line
9
stem cell
Organ
86
liver
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
15
pancreas
8
embryo
3
kidney
2
epithelium
1
mammary gland
Project
246
AMP
5
T1D
2
community
Genome assembly (visualization)
202
hg19
188
GRCh38
Lab
213
AMP-T2D consortium
33
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
1
inconsistent assembly
month_released!
November, 2017
assay_title!
DNase-seq
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
253 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
63
14
1
2
2
2
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
Panc1
13
1
H1-hESC
8
EndoC_BH1
3
2
1
EndoC-BH1
1
1
HEK293T
2
early embryonic cell
2
iPSC derived cell line
2
MCF-7
1
MIN6
1
fibroblast cell line
1
glomerular visceral epithelial cell
1
See all biosamples
Download