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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
424
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
29
DNA accessibility
4
3D chromatin structure
Date released
16
May, 2021
9
February, 2021
2
March, 2020
2
November, 2019
1
August, 2021
1
December, 2018
1
January, 2018
1
October, 2019
Available data
10
bam
10
bed narrowPeak
4
bigWig
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bed3+
1
fastq
1
hdf5
1
tsv
Organism
33
Homo sapiens
Biosample type
276
tissue
210
primary cell
46
in vitro differentiated cells
33
cell line
Organ
21
pancreas
20
epithelium
8
artery
8
blood vessel
8
heart
8
vasculature
3
liver
1
blood
1
bodily fluid
Project
33
AMP
Genome assembly (visualization)
16
hg19
11
GRCh38
Lab
32
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
20
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
inconsistent assembly
month_released!
November, 2018
BIOSAMPLE
ASSAY
33 results
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ATAC-seq
Hi-C
cell line
EndoC_BH1
19
1
smooth muscle cell of the coronary artery
8
HepG2
1
2
GM12878
1
Panc1
1
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