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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
210
ChIP-seq
103
total RNA-seq
4
WGBS
3
RRBS
Assay category
210
DNA binding
103
Transcription
DNA accessibility
7
DNA methylation
Target of assay
74
histone modification
73
histone
72
transcription factor
64
control
45
broad histone mark
28
narrow histone mark
15
RNA binding protein
2
chromatin remodeller
Date released
171
August, 2017
58
October, 2018
48
December, 2017
November, 2018
9
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
May, 2022
6
September, 2017
2
July, 2018
Available data
1646
bam
1535
bigWig
1075
tsv
588
bed narrowPeak
370
bigBed narrowPeak
320
fastq
238
tagAlign
156
txt
35
bed broadPeak
28
bed bed3+
19
bed bedMethyl
19
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
313
Homo sapiens
Biosample type
366
cell line
348
primary cell
320
tissue
140
in vitro differentiated cells
4
stem cell
Organ
180
pancreas
75
liver
40
adipose tissue
40
connective tissue
14
spleen
9
brain
2
musculature of body
Project
320
AMP
Genome assembly (visualization)
248
hg19
247
GRCh38
Lab
314
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2018
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
320 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
tissue
islet of Langerhans
28
103
liver
63
1
1
body of pancreas
33
pancreas
16
spleen
14
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
right lobe of liver
10
brain
9
adipose tissue
2
3
skeletal muscle tissue
2
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