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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
394
ChIP-seq
100
total RNA-seq
13
ATAC-seq
2
Hi-C
1
pCHi-C
Assay category
394
DNA binding
100
Transcription
13
DNA accessibility
2
3D chromatin structure
Target of assay
345
transcription factor
78
recombinant protein
62
RNA binding protein
31
histone
31
histone modification
30
chromatin remodeller
16
narrow histone mark
15
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
93
February, 2021
54
November, 2018
27
December, 2018
23
August, 2021
20
January, 2019
October, 2019
14
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
497
bigWig
490
bam
385
bed narrowPeak
367
fastq
343
bigBed narrowPeak
101
tsv
58
bed broadPeak
58
bigBed broadPeak
17
tagAlign
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bed3+
Organism
510
Homo sapiens
Biosample type
1592
tissue
602
primary cell
510
cell line
289
in vitro differentiated cells
3
stem cell
Organ
330
liver
64
artery
64
blood vessel
64
heart
64
vasculature
55
blood
55
bodily fluid
50
epithelium
50
pancreas
8
embryo
Project
506
AMP
4
T1D
Genome assembly (visualization)
510
hg19
444
GRCh38
Lab
495
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
50
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
October, 2019
February, 2020
BIOSAMPLE
ASSAY
510 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
cell line
HepG2
322
5
1
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
1
EndoC_BH1
13
33
3
1
H1-hESC
8
early embryonic cell
2
iPSC derived cell line
1
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