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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
ChIP-seq
3
MeRIP-seq
Assay category
110
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
71
November, 2017
10
November, 2018
9
January, 2019
9
October, 2019
4
August, 2021
3
February, 2021
3
November, 2020
2
December, 2018
2
November, 2019
Available data
106
bam
92
fastq
43
bigWig
30
bed narrowPeak
30
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
4
tagAlign
Organism
113
Homo sapiens
Biosample type
189
tissue
113
cell line
40
in vitro differentiated cells
36
primary cell
1
stem cell
Organ
80
liver
16
blood
16
bodily fluid
11
pancreas
5
epithelium
3
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
Project
113
AMP
Genome assembly (visualization)
43
hg19
28
GRCh38
Lab
106
AMP-T2D consortium
4
Bing Ren, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
8
inconsistent ontology term
1
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
8
inconsistent control run_type
month_released!
September, 2020
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
MeRIP-seq
cell line
HepG2
80
GM12878
16
Panc1
6
EndoC_BH1
2
3
smooth muscle cell of the coronary artery
2
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
iPSC derived cell line
1
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