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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1391
total RNA-seq
318
single cell RNA-seq
18
small RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
1729
Transcription
1670
DNA binding
789
DNA accessibility
97
DNA methylation
30
3D chromatin structure
1
DNA sequencing
Target of assay
3
control
Date released
541
February, 2021
190
May, 2020
173
August, 2021
168
July, 2018
98
May, 2021
90
February, 2023
89
August, 2017
65
July, 2019
60
May, 2022
56
September, 2020
April, 2018
47
September, 2023
28
October, 2019
27
September, 2018
25
February, 2020
20
November, 2019
13
March, 2020
9
April, 2020
6
December, 2019
5
January, 2019
4
May, 2023
4
November, 2020
3
August, 2018
3
June, 2018
2
March, 2023
2
October, 2018
1
November, 2018
Available data
1366
tsv
1230
bam
1226
bigWig
312
fastq
72
txt
52
zippedFastqFolder
8
csv
2
bed bed3+
Organism
1727
Homo sapiens
Biosample type
1221
tissue
393
primary cell
in vitro differentiated cells
115
cell line
stem cell
Organ
470
connective tissue
440
pancreas
401
adipose tissue
193
liver
166
epithelium
165
heart
125
kidney
67
blood vessel
67
vasculature
62
bone element
58
artery
24
brain
19
eye
9
lung
9
musculature of body
8
embryo
7
limb
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
1389
AMP
177
HPAP
105
T1D
47
KPMP
9
LungMap
2
community
Genome assembly (visualization)
1227
hg19
1225
GRCh38
Lab
1294
AMP-T2D consortium
177
Klaus Kaestner, Upenn
110
Kyle Gaulton, UCSD
60
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
9
Xin Sun, UCSD
2
Anna Gloyn, Oxford
Audit category:
48
inconsistent ontology term
5
audit script error
month_released!
April, 2018
biosample_type!
stem cell
in vitro differentiated cells
BIOSAMPLE
ASSAY
1729 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
adipose tissue
382
islet of Langerhans
292
liver
167
1
1
kidney
49
64
bone tissue
58
+ See 56 more…
primary cell
Langerhans cell
85
pancreatic alpha cell
52
9
monocyte
54
exocrine cell
39
pancreatic beta cell
21
9
+ See 59 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
HepG2
14
H1-hESC
8
EndoC-BH1
1
1
+ See 5 more…
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