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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
144
single cell RNA-seq
2
small RNA-seq
Assay category
393
Transcription
288
DNA accessibility
279
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
76
February, 2023
56
September, 2020
55
May, 2021
48
July, 2018
47
May, 2020
April, 2018
33
May, 2022
27
September, 2018
18
July, 2019
13
February, 2021
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
2
October, 2019
1
November, 2018
Available data
211
bigWig
210
fastq
209
bam
209
tsv
52
zippedFastqFolder
2
bed bed3+
2
csv
Organism
393
Homo sapiens
Biosample type
1221
tissue
393
primary cell
138
in vitro differentiated cells
115
cell line
stem cell
Organ
130
epithelium
122
pancreas
13
connective tissue
6
kidney
5
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
177
HPAP
120
AMP
96
T1D
Genome assembly (visualization)
211
hg19
209
GRCh38
Lab
177
Klaus Kaestner, Upenn
118
AMP-T2D consortium
98
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
month_released!
April, 2018
biosample_type!
stem cell
BIOSAMPLE
ASSAY
393 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
52
9
monocyte
54
exocrine cell
39
pancreatic beta cell
21
9
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