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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
snATAC-seq
5
Hi-C
Assay category
52
Transcription
41
DNA methylation
39
DNA accessibility
5
3D chromatin structure
Date released
113
May, 2022
19
September, 2020
4
July, 2019
1
October, 2019
Available data
3343
bam
3120
bigWig
1817
bed narrowPeak
1551
tsv
1287
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
272
bed bed3+
160
txt
132
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
137
Homo sapiens
Biosample type
136
primary cell
1
cell line
Organ
82
epithelium
81
pancreas
3
brain
2
blood vessel
2
vasculature
1
connective tissue
1
liver
Project
132
HPAP
5
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
132
Klaus Kaestner, Upenn
5
AMP-T2D consortium
Audit category:
1
inconsistent assembly
month_released!
April, 2018
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
137 results
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single cell RNA-seq
WGBS
ATAC-seq
Hi-C
primary cell
Langerhans cell
52
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
astrocyte of the cerebellum
1
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cell line
Panc1
1
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