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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1798
ChIP-seq
1103
total RNA-seq
448
ATAC-seq
286
single cell RNA-seq
210
DNase-seq
86
RNA microarray
62
snATAC-seq
55
pCHi-C
34
Hi-C
28
WGBS
21
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
28
DNA methylation
Date released
May, 2022
12
July, 2019
7
November, 2018
6
February, 2021
3
August, 2017
Available data
16
bam
15
bed bedMethyl
15
bigBed bedMethyl
15
bigWig
14
fastq
6
tsv
Organism
28
Homo sapiens
Biosample type
21
tissue
6
primary cell
1
cell line
Organ
10
pancreas
8
heart
adipose tissue
6
connective tissue
6
epithelium
5
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
22
AMP
6
HPAP
Genome assembly (visualization)
15
GRCh38
Lab
22
AMP-T2D consortium
6
Klaus Kaestner, Upenn
month_released!
April, 2018
May, 2022
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
28 results
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WGBS
tissue
heart left ventricle
4
liver
3
aorta
2
body of pancreas
2
heart right ventricle
2
+ See 6 more…
primary cell
pancreatic alpha cell
6
cell line
HepG2
1
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