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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ATAC-seq
11
snATAC-seq
8
DNase-seq
2
FAIRE-seq
Assay category
387
Transcription
218
DNA binding
124
DNA accessibility
6
3D chromatin structure
6
DNA methylation
Date released
20
November, 2019
18
May, 2022
16
May, 2021
14
September, 2018
13
February, 2023
8
January, 2021
5
August, 2017
5
October, 2017
5
September, 2017
4
June, 2019
4
March, 2019
4
March, 2020
4
October, 2019
3
November, 2018
1
August, 2022
Available data
75
bam
74
bed narrowPeak
51
fastq
41
bigWig
32
bigBed narrowPeak
9
bed broadPeak
7
bed bed3+
7
bigBed broadPeak
2
tsv
Organism
124
Homo sapiens
Biosample type
82
tissue
22
primary cell
20
cell line
Organ
163
kidney
124
pancreas
77
heart
74
epithelium
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
103
AMP
HPAP
21
T1D
Genome assembly (visualization)
79
hg19
57
GRCh38
Lab
80
AMP-T2D consortium
39
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
1
audit script error
month_released!
April, 2018
award.project!
HPAP
BIOSAMPLE
ASSAY
124 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
58
7
1
1
body of pancreas
4
4
pancreas
4
2
1
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
cell line
EndoC_BH1
19
Panc1
1
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