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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
Assay category
34
DNA binding
Target of assay
405
transcription factor
391
histone
391
histone modification
242
broad histone mark
149
narrow histone mark
93
RNA binding protein
81
recombinant protein
34
chromatin remodeller
5
other context
5
other post-translational modification
Date released
15
November, 2017
7
November, 2018
6
January, 2019
3
December, 2017
2
December, 2018
1
August, 2017
Available data
36
bam
36
bed narrowPeak
36
bigWig
36
fastq
34
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
34
Homo sapiens
Biosample type
30
cell line
2
tissue
1
in vitro differentiated cells
1
primary cell
Organ
23
liver
10
blood
10
bodily fluid
1
epithelium
Project
34
AMP
Genome assembly (visualization)
34
hg19
32
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
8
inconsistent control run_type
month_released!
April, 2018
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
cell line
HepG2
20
GM12878
10
tissue
liver
2
in vitro differentiated cells
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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