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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
32
DNA binding
10
DNA accessibility
Target of assay
30
histone
30
histone modification
18
broad histone mark
12
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
312
November, 2017
210
June, 2019
97
May, 2019
73
November, 2018
70
October, 2019
64
April, 2019
50
December, 2017
45
October, 2018
42
August, 2017
30
December, 2018
21
January, 2019
14
September, 2018
6
October, 2017
5
September, 2017
2
July, 2019
1
November, 2020
Available data
287
fastq
282
bam
272
bigWig
142
bed narrowPeak
89
tsv
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
36
Homo sapiens
Biosample type
22
tissue
19
primary cell
1
in vitro differentiated cells
Organ
17
pancreas
6
liver
3
connective tissue
3
epithelium
2
adipose tissue
Project
42
AMP
Genome assembly (visualization)
42
hg19
38
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
6
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
April, 2018
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
pancreas
12
liver
5
islet of Langerhans
1
1
adipose tissue
1
right lobe of liver
1
+ See 1 more…
primary cell
skeletal muscle myoblast
14
2
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
adipocyte
1
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