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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
ChIP-seq
4
total RNA-seq
3
RRBS
2
Hi-C
2
small RNA-seq
1
ATAC-seq
1
snATAC-seq
Assay category
35
DNA accessibility
6
Transcription
3
DNA methylation
2
3D chromatin structure
Date released
33
June, 2019
5
July, 2019
4
March, 2020
2
August, 2017
1
January, 2018
1
May, 2022
Available data
40
bigWig
39
bam
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
6
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
46
Homo sapiens
Biosample type
42
tissue
4
primary cell
Organ
511
connective tissue
456
pancreas
407
adipose tissue
196
liver
177
epithelium
114
heart
90
kidney
86
vasculature
83
blood vessel
70
bone element
68
artery
48
limb
46
musculature of body
41
brain
32
eye
18
ureter
14
embryo
12
skeleton
7
nerve
5
vein
2
pericardium
2
spleen
1
blood
1
bodily fluid
Project
46
AMP
Genome assembly (visualization)
46
hg19
40
GRCh38
Lab
46
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
April, 2018
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
46 results
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DNase-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
ATAC-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
skeletal muscle tissue
1
2
1
1
1
psoas muscle
2
2
forelimb muscle
1
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primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
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