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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
3
MeRIP-seq
Assay category
118
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
71
November, 2017
16
October, 2019
12
November, 2019
7
August, 2021
4
January, 2019
3
February, 2021
3
November, 2018
3
November, 2020
1
March, 2020
1
May, 2021
Available data
111
bam
78
fastq
50
bigWig
35
bed narrowPeak
20
bigBed narrowPeak
15
tagAlign
14
bed broadPeak
14
bigBed broadPeak
Organism
121
Homo sapiens
Biosample type
815
tissue
272
primary cell
149
in vitro differentiated cells
121
cell line
3
stem cell
Organ
78
liver
30
pancreas
17
epithelium
7
blood
7
bodily fluid
3
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
Project
119
AMP
2
T1D
Genome assembly (visualization)
50
hg19
32
GRCh38
Lab
111
AMP-T2D consortium
7
Bing Ren, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
20
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
April, 2018
BIOSAMPLE
ASSAY
121 results
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ChIP-seq
MeRIP-seq
cell line
HepG2
78
EndoC_BH1
14
3
Panc1
13
GM12878
7
smooth muscle cell of the coronary artery
2
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
iPSC derived cell line
1
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