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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
861
total RNA-seq
239
ATAC-seq
179
single cell RNA-seq
174
DNase-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
23
WGBS
15
Hi-C
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1053
Transcription
DNA binding
445
DNA accessibility
33
DNA methylation
15
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
544
February, 2021
229
August, 2021
163
June, 2019
120
July, 2018
102
August, 2017
95
February, 2023
69
July, 2019
47
September, 2023
46
October, 2019
40
May, 2021
40
November, 2019
35
March, 2020
26
May, 2022
24
February, 2020
19
April, 2020
15
May, 2023
13
November, 2018
8
January, 2021
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1029
bam
981
bigWig
922
tsv
365
bed narrowPeak
180
bigBed narrowPeak
175
bed broadPeak
174
bed bed3+
173
bigBed broadPeak
157
txt
151
fastq
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
Organism
1662
Homo sapiens
Biosample type
1664
tissue
799
primary cell
196
in vitro differentiated cells
155
cell line
7
stem cell
Organ
473
connective tissue
415
adipose tissue
388
pancreas
272
kidney
liver
190
heart
158
bone element
60
blood vessel
60
vasculature
56
brain
56
limb
54
eye
53
musculature of body
45
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1569
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1113
GRCh38
1048
hg19
Lab
1392
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
9
audit script error
month_released!
April, 2019
assay_slims!
DNA binding
organ_slims!
liver
BIOSAMPLE
ASSAY
1664 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
3
1
3
islet of Langerhans
292
68
6
1
7
4
3
1
1
4
kidney
49
75
64
13
6
1
1
1
bone element
84
bone tissue
58
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