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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
18
snATAC-seq
17
pCHi-C
17
total RNA-seq
11
ATAC-seq
Assay category
37
DNA binding
29
DNA accessibility
17
Transcription
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
control
Date released
60
May, 2021
18
February, 2023
16
January, 2021
6
May, 2022
Available data
6
bam
6
fastq
6
txt
Organism
100
Homo sapiens
Biosample type
42
in vitro differentiated cells
34
tissue
24
primary cell
cell line
Organ
33
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
51
T1D
49
AMP
Genome assembly (visualization)
hg19
180
GRCh38
Lab
872
AMP-T2D consortium
321
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
100
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Bing Ren, UCSD
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent ontology term
month_released!
April, 2019
assembly!
hg19
biosample_type!
cell line
BIOSAMPLE
ASSAY
100 results
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ChIP-seq
snATAC-seq
pCHi-C
total RNA-seq
ATAC-seq
in vitro differentiated cells
embryonic stem cell
37
5
tissue
islet of Langerhans
6
11
11
pancreas
4
1
thymus
1
primary cell
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
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