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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
49
total RNA-seq
DNase-seq
8
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
Assay category
113
Transcription
81
DNA accessibility
8
DNA binding
Target of assay
8
control
Date released
129
August, 2021
47
September, 2023
14
May, 2023
8
February, 2021
6
October, 2019
April, 2019
3
December, 2019
2
March, 2020
1
June, 2019
1
May, 2019
Available data
64
bed narrowPeak
64
xls
62
txt
12
tsv
8
bam
5
csv
Organism
211
Homo sapiens
Biosample type
201
tissue
7
cell line
3
primary cell
Organ
286
pancreas
211
kidney
205
epithelium
192
heart
165
liver
112
brain
94
connective tissue
89
bone element
70
blood vessel
70
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
164
AMP
47
KPMP
Genome assembly (visualization)
108
GRCh38
hg19
Lab
141
Katalin Susztak, Upenn
47
KPMP
21
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
audit script error
7
inconsistent ontology term
month_released!
April, 2019
assembly!
hg19
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
211 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
tissue
kidney
75
64
49
2
6
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
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cell line
HEK293T
2
RCC 7860 vector
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 VHL
1
primary cell
epithelial cell of proximal tubule
2
kidney epithelial cell
1
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