Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
141
single cell RNA-seq
88
ChIP-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
88
DNA binding
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
102
May, 2021
3
March, 2020
Available data
88
bam
88
bed narrowPeak
88
bigWig
84
tagAlign
Organism
105
Homo sapiens
Biosample type
100
primary cell
3
tissue
2
cell line
Organ
4
pancreas
2
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
105
T1D
Genome assembly (visualization)
88
GRCh38
88
hg19
Lab
101
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
April, 2019
award.project!
AMP
BIOSAMPLE
ASSAY
105 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
pCHi-C
primary cell
monocyte
84
1
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 10 more…
tissue
islet of Langerhans
2
thymus
1
cell line
EndoC_BH1
2
See all biosamples
Download