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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
Hi-C
Assay category
1646
DNA binding
1443
Transcription
650
DNA accessibility
48
DNA methylation
25
3D chromatin structure
1
DNA sequencing
Date released
8
July, 2019
8
March, 2020
3
August, 2021
3
October, 2019
1
December, 2018
1
March, 2019
1
November, 2019
Available data
14
hic
12
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
1
bedpe
1
fastq
Organism
25
Homo sapiens
Biosample type
16
tissue
6
primary cell
3
cell line
Organ
6
musculature of body
5
blood vessel
5
pancreas
5
vasculature
4
epithelium
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
Project
25
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
19
hg19
1
GRCh38
Lab
21
AMP-T2D consortium
3
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
month_released!
April, 2019
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
25 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
+ See 5 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
HepG2
2
Panc1
1
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