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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
Assay category
95
DNA binding
Target of assay
685
histone modification
684
histone
493
transcription factor
361
narrow histone mark
322
broad histone mark
294
control
95
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
34
November, 2017
21
November, 2018
11
October, 2018
6
August, 2017
6
January, 2019
5
May, 2021
April, 2019
4
December, 2017
4
May, 2019
2
December, 2018
1
August, 2021
1
November, 2019
Available data
89
bam
88
bigWig
87
bed narrowPeak
84
fastq
80
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
tar
Organism
95
Homo sapiens
Biosample type
65
cell line
19
tissue
11
in vitro differentiated cells
primary cell
Organ
58
liver
10
blood
10
bodily fluid
9
connective tissue
9
pancreas
5
adipose tissue
3
blood vessel
3
epithelium
3
vasculature
2
heart
1
artery
Project
95
AMP
Genome assembly (visualization)
87
hg19
83
GRCh38
Lab
89
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
month_released!
April, 2019
biosample_type!
primary cell
BIOSAMPLE
ASSAY
95 results
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Clear Filters
ChIP-seq
cell line
HepG2
54
GM12878
10
EndoC_BH1
1
tissue
body of pancreas
5
omental fat pad
3
islet of Langerhans
2
subcutaneous adipose tissue
2
ascending aorta
1
+ See 6 more…
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
See all biosamples
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