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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
21
ATAC-seq
Assay category
68
DNA binding
21
DNA accessibility
Target of assay
53
histone
53
histone modification
28
narrow histone mark
25
broad histone mark
15
transcription factor
2
RNA binding protein
1
chromatin remodeller
Date released
August, 2017
34
December, 2017
25
August, 2021
16
February, 2018
5
May, 2021
5
November, 2019
2
February, 2023
2
October, 2019
Available data
237
bam
211
bigWig
131
tsv
89
bed narrowPeak
87
fastq
26
tagAlign
18
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
Organism
89
Homo sapiens
Biosample type
853
tissue
404
cell line
262
primary cell
89
in vitro differentiated cells
2
stem cell
Organ
18
epithelium
14
embryo
14
liver
2
connective tissue
2
pancreas
Project
89
AMP
Genome assembly (visualization)
88
hg19
85
GRCh38
Lab
85
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
13
inconsistent ontology term
Audit category:
11
inconsistent control read length
month_released!
April, 2019
August, 2017
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
ATAC-seq
in vitro differentiated cells
neural progenitor cell
13
10
hepatocyte
14
pancreatic endoderm
12
definitive endodermal cell
6
primitive gut cell
6
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