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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ATAC-seq
41
WGBS
36
ChIP-seq
17
DNase-seq
1
FAIRE-seq
Assay category
79
DNA accessibility
41
DNA methylation
36
DNA binding
Target of assay
29
histone
29
histone modification
15
narrow histone mark
14
broad histone mark
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
80
May, 2022
18
June, 2019
14
December, 2017
14
October, 2019
14
September, 2018
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2017
Available data
317
bam
301
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
156
Homo sapiens
Biosample type
141
primary cell
14
in vitro differentiated cells
1
cell line
Organ
358
liver
171
pancreas
156
epithelium
127
brain
86
kidney
84
limb
83
vasculature
79
blood vessel
54
blood
54
bodily fluid
48
heart
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
80
HPAP
76
AMP
Genome assembly (visualization)
75
GRCh38
70
hg19
Lab
80
Klaus Kaestner, Upenn
76
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
month_released!
April, 2019
BIOSAMPLE
ASSAY
156 results
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ATAC-seq
WGBS
ChIP-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
28
25
pancreatic beta cell
20
16
endothelial cell of umbilical vein
10
2
1
pancreatic acinar cell
9
kidney epithelial cell
4
1
+ See 12 more…
in vitro differentiated cells
hepatocyte
14
cell line
glomerular visceral epithelial cell
1
See all biosamples
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