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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
131
ChIP-seq
42
ATAC-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
2
single cell RNA-seq
Assay category
138
Transcription
131
DNA binding
42
DNA accessibility
Target of assay
75
histone
75
histone modification
39
narrow histone mark
36
broad histone mark
29
control
27
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
132
May, 2021
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
6
October, 2019
5
November, 2019
4
January, 2018
4
March, 2020
2
December, 2019
Available data
237
bam
211
bigWig
131
tsv
89
bed narrowPeak
87
fastq
26
tagAlign
18
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
Organism
319
Homo sapiens
Biosample type
2403
tissue
1025
primary cell
660
cell line
319
in vitro differentiated cells
10
stem cell
Organ
29
embryo
28
connective tissue
24
epithelium
15
liver
3
pancreas
1
heart
Project
319
AMP
Genome assembly (visualization)
242
hg19
216
GRCh38
4
hg18
Lab
265
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
109
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
April, 2019
August, 2017
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
319 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
Capture-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
cardiac precursors (cardiac muscle cell)
19
1
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