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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
821
ChIP-seq
Assay category
821
DNA binding
777
Transcription
462
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
568
histone modification
567
histone
301
narrow histone mark
266
broad histone mark
165
control
88
transcription factor
24
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
176
August, 2017
115
May, 2019
82
November, 2017
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
September, 2017
2
March, 2020
Available data
637
bam
550
bigWig
530
bed narrowPeak
313
bigBed narrowPeak
238
tagAlign
214
fastq
35
bed broadPeak
26
bed bed3+
1
tagAlign bed3+
Organism
814
Homo sapiens
Biosample type
821
tissue
476
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
209
brain
155
liver
111
pancreas
74
connective tissue
73
adipose tissue
73
blood vessel
73
vasculature
66
heart
66
limb
35
nerve
29
musculature of body
28
artery
20
spleen
4
gonad
4
kidney
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
819
AMP
2
T1D
Genome assembly (visualization)
524
GRCh38
462
hg19
Lab
781
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
April, 2019
February, 2021
September, 2017
BIOSAMPLE
ASSAY
821 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
65
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
body of pancreas
35
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