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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
59
single cell RNA-seq
53
total RNA-seq
14
ChIP-seq
6
snATAC-seq
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
RNA microarray
1
RRBS
1
small RNA-seq
Assay category
150
DNA accessibility
113
Transcription
14
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
7
recombinant protein
7
transcription factor
5
control
2
histone
2
histone modification
2
narrow histone mark
Date released
130
August, 2021
68
June, 2019
47
September, 2023
April, 2019
17
October, 2019
14
May, 2023
February, 2021
4
July, 2019
2
December, 2019
2
March, 2020
Available data
142
bed narrowPeak
88
bam
83
bigWig
69
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
57
txt
8
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
284
Homo sapiens
Biosample type
267
tissue
17
cell line
Organ
914
pancreas
788
liver
epithelium
323
kidney
286
brain
270
heart
229
connective tissue
170
vasculature
164
blood vessel
116
limb
105
adipose tissue
96
musculature of body
75
artery
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
237
AMP
47
KPMP
Genome assembly (visualization)
157
GRCh38
84
hg19
Lab
142
Katalin Susztak, Upenn
93
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
1
audit script error
month_released!
April, 2019
February, 2021
organ_slims!
epithelium
BIOSAMPLE
ASSAY
284 results
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ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
RNA microarray
RRBS
small RNA-seq
tissue
kidney
75
13
59
49
4
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 6 more…
cell line
RCC 7860 HIF1a re-expression
1
4
RCC 7860 vector
1
3
1
RCC 7860 HIF2a over-expression
1
3
HEK293T
2
RCC 7860 VHL
1
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