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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
309
ChIP-seq
Assay category
309
DNA binding
Target of assay
255
histone
255
histone modification
133
broad histone mark
122
narrow histone mark
49
control
5
transcription factor
Date released
84
May, 2021
78
November, 2017
71
August, 2017
50
May, 2020
October, 2019
14
October, 2017
8
February, 2021
4
August, 2021
Available data
2776
bam
2642
bigWig
1455
tsv
1433
bed narrowPeak
1217
fastq
893
bigBed narrowPeak
312
bed broadPeak
309
tagAlign
275
bigBed broadPeak
240
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
17
hic
15
bedpe bed3+
8
csv
7
bed bed3
4
hdf5
3
cool
3
tar
1
bedpe
1
vcf
Organism
302
Homo sapiens
Biosample type
189
tissue
100
primary cell
in vitro differentiated cells
20
cell line
Organ
86
liver
80
brain
16
pancreas
15
musculature of body
8
adipose tissue
8
connective tissue
6
artery
6
blood vessel
6
heart
6
vasculature
4
epithelium
Project
225
AMP
84
T1D
Genome assembly (visualization)
188
GRCh38
181
hg19
Lab
225
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
month_released!
April, 2019
October, 2019
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
309 results
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ChIP-seq
tissue
liver
70
caudate nucleus
15
skeletal muscle tissue
15
substantia nigra
15
brain
14
+ See 6 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
cell line
HepG2
12
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
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