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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
44
ATAC-seq
11
ChIP-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
46
DNA accessibility
11
DNA binding
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
76
bam
64
bigWig
58
tsv
53
bed narrowPeak
6
tagAlign
5
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
115
Homo sapiens
Biosample type
66
cell line
47
tissue
2
primary cell
Organ
713
liver
707
pancreas
675
connective tissue
490
adipose tissue
331
epithelium
288
heart
200
brain
189
vasculature
183
blood vessel
158
bone element
115
artery
110
kidney
96
musculature of body
61
blood
61
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
18
ureter
16
skeleton
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
115
AMP
Genome assembly (visualization)
107
GRCh38
72
hg19
Lab
115
AMP-T2D consortium
month_released!
April, 2019
October, 2019
BIOSAMPLE
ASSAY
115 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
5
2
pulmonary artery
2
tibial artery
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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