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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
11
ChIP-seq
9
ATAC-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
11
DNA accessibility
11
DNA binding
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
66
February, 2021
February, 2023
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
76
bam
64
bigWig
58
tsv
18
bed narrowPeak
6
tagAlign
5
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
80
Homo sapiens
Biosample type
66
cell line
12
tissue
2
primary cell
Organ
872
pancreas
784
liver
666
connective tissue
489
adipose tissue
437
epithelium
301
kidney
292
heart
199
brain
154
vasculature
151
bone element
148
blood vessel
96
musculature of body
80
artery
69
blood
69
bodily fluid
53
limb
37
embryo
25
spleen
20
lung
18
ureter
9
eye
8
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
80
AMP
Genome assembly (visualization)
72
GRCh38
72
hg19
Lab
80
AMP-T2D consortium
month_released!
April, 2019
October, 2019
February, 2023
BIOSAMPLE
ASSAY
80 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
tissue
coronary artery
1
5
1
2
pulmonary artery
2
tibial artery
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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